PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04462.60
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 265aa    MW: 29454.1 Da    PI: 8.6059
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04462.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20131180255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+  ++g
  Jcr4S04462.60 131 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFNTAEEAARAYDKAAIDFRG 180
                    59*******.**********82....48**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.47E-35130188No hitNo description
PROSITE profilePS5103225.146131188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-33131188IPR001471AP2/ERF domain
PfamPF008472.0E-14131180IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23131189IPR016177DNA-binding domain
SMARTSM003801.3E-38131194IPR001471AP2/ERF domain
PRINTSPR003672.4E-12132143IPR001471AP2/ERF domain
PRINTSPR003672.4E-12154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MHKSSKRLKH TGPPPTEYLP PAMLLPRLTQ DQELFIMVSA LKNVVSGTTS STSVATDLFH  60
QFAAAASSSS PATAVASTAV TTTTDSLYNP IPPPSDLDTC NICKIKGCLG CNFFPPNQEE  120
KKGTRKRVKK NYRGVRQRPW GKWAAEIRDP RRATRVWLGT FNTAEEAARA YDKAAIDFRG  180
PRAKLNFPFP DNTASNLEGQ STPQEQQQKE NGKRKELEVE MQVGKEYEFW EKIGEDEIQQ  240
WMNMMDFNGD SSDSTGTAAT TTIAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23130189161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-23130194469ATERF1
3gcc_A4e-23130194469ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066876.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A067LCS40.0A0A067LCS4_JATCU; Uncharacterized protein
STRINGPOPTR_0004s14840.18e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.14e-33redox responsive transcription factor 1